Transcript: lnc-CHD2-4:4

Basic information

LNCipedia transcript ID: lnc-CHD2-4:4 
LNCipedia gene ID: lnc-CHD2-4
Location (hg19): chr15:93856415-94041876
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 515 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000556519; ENST00000556519.1; RP11-266O8.1-002; OTTHUMT00000415158.1; NONHSAT049702
Alternative gene names: ENSG00000257060; RP11-266O8.1; ENSG00000257060.2; OTTHUMG00000171785.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -108.4589 non-coding 
CPAT coding probability 0.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHD2-4:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CHD2-4:4
3.1 lnc-CHD2-4:4
4.0 lnc-CHD2-4:4
4.1 lnc-CHD2-4:4
5.0 lnc-CHD2-4:4
5.1 lnc-TTLL13P-78:11
5.2 lnc-CHD2-4:4