Transcript: lnc-CHD9-4:11

Basic information

LNCipedia transcript ID: lnc-CHD9-4:11 
LNCipedia gene ID: lnc-CHD9-4
Location (hg19): chr16:52581179-52596481
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1799 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000027321.1|MICT00000132448.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -94.5374 non-coding 
CPAT coding probability 1.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHD9-4:11 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-CHD9-4:11
5.0 lnc-CHD9-4:11
5.1 lnc-ADGRG1-114:3
5.2 lnc-CHD9-4:11