Transcript: lnc-CHD9-4:2

Basic information

LNCipedia transcript ID: lnc-CHD9-4:2 
LNCipedia gene ID: lnc-CHD9-4
Location (hg19): chr16:52615179-52624898
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 220 bp
Exons: 3
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT142533; FPKM1_group_11649_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -517.9181 non-coding 
CPAT coding probability 5.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHD9-4:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CHD9-4:2
4.0 lnc-CHD9-4:2
4.1 lnc-CHD9-4:2
5.0 lnc-CHD9-4:2
5.1 lnc-ADGRG1-114:6
5.2 lnc-CHD9-4:2