Transcript: lnc-CHERP-1:2

Basic information

LNCipedia transcript ID: lnc-CHERP-1:2 
LNCipedia gene ID: lnc-CHERP-1
Location (hg19): chr19:16653557-16655487
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1931 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT062791; ENST00000595909.1
Alternative gene names: ENSG00000269399.1; CTD-3222D19.7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 17.5455 non-coding 
CPAT coding probability 2.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHERP-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CHERP-1:2
4.0 lnc-CHERP-1:2
4.1 lnc-CHERP-1:2
5.0 lnc-CHERP-1:2
5.1 lnc-PALM3-78:2
5.2 lnc-CHERP-1:2