Transcript: lnc-CHMP2B-1:2

Basic information

LNCipedia transcript ID: lnc-CHMP2B-1:2 
LNCipedia gene ID: lnc-CHMP2B-1
Location (hg19): chr3:87138446-87203533
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 358 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00006123; NONHSAT090684
Alternative gene names: XLOC_002726; linc-CHMP2B-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -187.0345 non-coding 
CPAT coding probability 0.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHMP2B-1:2 no no no no

Available literature

  1. Zhi (2014), A novel reannotation strategy for dissecting DNA methylation patterns of human long intergenic non-coding RNAs in cancers., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CHMP2B-1:2
3.1 lnc-CHMP2B-1:2
4.0 lnc-CHMP2B-1:2
4.1 lnc-CHMP2B-1:2
5.0 lnc-CHMP2B-1:2
5.1 lnc-HTR1F-5:9
5.2 lnc-CHMP2B-1:2