Transcript: lnc-CHMP2B-1:4

Basic information

LNCipedia transcript ID: lnc-CHMP2B-1:4 
LNCipedia gene ID: lnc-CHMP2B-1
RefSeq ID: NR_104153
Location (hg19): chr3:87138430-87206219
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 668 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_104153; NR_104153.1
Alternative gene names: LINC00506


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -187.0345 non-coding 
CPAT coding probability 0.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHMP2B-1:4 no no no no

Available literature

  1. Zhi (2014), A novel reannotation strategy for dissecting DNA methylation patterns of human long intergenic non-coding RNAs in cancers., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CHMP2B-1:4
4.0 lnc-CHMP2B-1:4
4.1 lnc-CHMP2B-1:4
5.0 lnc-CHMP2B-1:4
5.1 lnc-HTR1F-5:4
5.2 lnc-CHMP2B-1:4