Transcript: lnc-CHMP2B-2:6

Basic information

LNCipedia transcript ID: lnc-CHMP2B-2:6 
LNCipedia gene ID: lnc-CHMP2B-2
Location (hg19): chr3:86769945-86771837
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 317 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00006908
Alternative gene names: XLOC_002725; linc-CHMP2B-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -124.7075 non-coding 
CPAT coding probability 3.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHMP2B-2:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CHMP2B-2:6
3.1 lnc-CHMP2B-2:6
4.0 lnc-CHMP2B-2:6
4.1 lnc-CHMP2B-2:6
5.0 lnc-CHMP2B-2:6
5.1 lnc-CADM2-2:9
5.2 lnc-CHMP2B-2:6