Transcript: lnc-CHMP4C-26:1

Basic information

LNCipedia transcript ID: lnc-CHMP4C-26:1 
LNCipedia gene ID: lnc-CHMP4C-26
Ensembl Gene ID: ENSG00000254394
Ensembl Transcript ID: ENST00000524359
Location (hg19): chr8:83824339-83874161
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 616 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000524359; ENST00000524359.1; CTD-2272D18.1-001; OTTHUMT00000379375.1; NONHSAT127490
Alternative gene names: ENSG00000254394; CTD-2272D18.1; ENSG00000254394.1; OTTHUMG00000164605.1; AC105031.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -68.8216 non-coding 
CPAT coding probability 1.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHMP4C-26:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CHMP4C-3:1
3.1 lnc-CHMP4C-6:1
4.0 lnc-CHMP4C-6:1
4.1 lnc-CHMP4C-6:1
5.0 lnc-CHMP4C-6:1
5.1 lnc-CA2-26:1
5.2 lnc-CHMP4C-26:1