Transcript: lnc-CHMP7-1:11

Basic information

LNCipedia transcript ID: lnc-CHMP7-1:11 
LNCipedia gene ID: lnc-CHMP7-1
Location (hg19): chr8:23082731-23088439
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1973 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000246582.2|ENST00000500853.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 15.4567 non-coding 
CPAT coding probability 12.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHMP7-1:11 no no no no

Available literature

  1. Mirza (2015), Transcriptomic landscape of lncRNAs in inflammatory bowel disease., Genome Med
  2. Kumar (2013), Human disease-associated genetic variation impacts large intergenic non-coding RNA expression., PLoS Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-CHMP7-1:11
5.0 lnc-CHMP7-1:11
5.1 lnc-RHOBTB2-8:6
5.2 lnc-CHMP7-1:11