Transcript: lnc-CHN1-41:1

Basic information

LNCipedia transcript ID: lnc-CHN1-41:1 
LNCipedia gene ID: lnc-CHN1-41
Location (hg19): chr2:175645224-175647018
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1795 bp
Exons: 1
Sources: Nielsen et al.,2014
Alternative transcript names: ucscGeneNc_uc002ujk_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.1474 non-coding 
CPAT coding probability 13.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHN1-41:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CHRNA1-1:1
4.0 lnc-CHRNA1-1:1
4.1 lnc-CHRNA1-1:1
5.0 lnc-CHRNA1-1:1
5.1 lnc-CHN1-7:1
5.2 lnc-CHN1-41:1