Transcript: lnc-CHN2-4:3

Basic information

LNCipedia transcript ID: lnc-CHN2-4:3 
LNCipedia gene ID: lnc-CHN2-4
Ensembl Gene ID: ENSG00000285412
Ensembl Transcript ID: ENST00000443025
RefSeq ID: NR_120523
Location (hg19): chr7:29164649-29167788
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 512 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT119782; NR_120523; NR_120523.1; ENST00000443025.5
Alternative gene names: LOC101928168; ENSG00000285412.1; AC005232.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -120.8223 non-coding 
CPAT coding probability 5.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHN2-4:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CHN2-4:3
4.0 lnc-CHN2-4:3
4.1 lnc-CHN2-4:3
5.0 lnc-CHN2-4:3
5.1 lnc-MTURN-28:5
5.2 lnc-CHN2-4:3