Transcript: lnc-CHODL-1:2

Basic information

LNCipedia transcript ID: lnc-CHODL-1:2 
LNCipedia gene ID: lnc-CHODL-1
Ensembl Gene ID: ENSG00000244676
Ensembl Transcript ID: ENST00000454737
Location (hg19): chr21:19181262-19183162
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 383 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000454737.1; AL109761.5-002; OTTHUMT00000158203.1; NONHSAT081296
Alternative gene names: ENSG00000244676.1; AL109761.5; OTTHUMG00000074504.1; ENSG00000244676.5; AL109761.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -214.2173 non-coding 
CPAT coding probability 4.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHODL-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CXADR-1:2
4.0 lnc-CXADR-1:2
4.1 lnc-CXADR-1:2
5.0 lnc-CXADR-1:2
5.1 lnc-OLIG1-116:2
5.2 lnc-CHODL-1:2