Transcript: lnc-CHP2-1:1

Basic information

LNCipedia transcript ID: lnc-CHP2-1:1 
LNCipedia gene ID: lnc-CHP2-1
Location (hg19): chr16:23886563-23889817
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2904 bp
Exons: 3
Sources: Biogazelle lncRNA chip
Alternative transcript names: ENST00000514276
Alternative gene names: ENSG00000249591


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -32.1408 non-coding 
CPAT coding probability 0.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHP2-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CHP2.1-1:1
3.1 lnc-CHP2.1-1:1
4.0 lnc-CHP2.1-1:1
4.1 lnc-CHP2.1-1:1
5.0 lnc-CHP2.1-1:1
5.1 lnc-TMC5-78:1
5.2 lnc-CHP2-1:1