Transcript: lnc-CHRM2-3:1

Basic information

LNCipedia transcript ID: lnc-CHRM2-3:1 
LNCipedia gene ID: lnc-CHRM2-3
Location (hg19): chr7:137065787-137068924
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3138 bp
Exons: 1
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT123583; FPKM1_group_30487_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -150.0795 non-coding 
CPAT coding probability 1.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHRM2-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CHRM2-3:1
4.0 lnc-CHRM2-3:1
4.1 lnc-CHRM2-3:1
5.0 lnc-CHRM2-3:1
5.1 lnc-CLEC2L-37:1
5.2 lnc-CHRM2-3:1