Transcript: lnc-CHRNA1-5:3

Basic information

LNCipedia transcript ID: lnc-CHRNA1-5:3 
LNCipedia gene ID: lnc-CHRNA1-5
Location (hg19): chr2:175676826-175711693
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 556 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT075586
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 744.9707 coding 
CPAT coding probability 38.96% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CHRNA1-5:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CHRNA1-2:4
4.0 lnc-CHRNA1-5:3
4.1 lnc-CHRNA1-5:3
5.0 lnc-CHRNA1-5:3
5.1 lnc-OLA1-27:3
5.2 lnc-CHRNA1-5:3