Transcript: lnc-CHRNA4-4:1

Basic information

LNCipedia transcript ID: lnc-CHRNA4-4:1 
LNCipedia gene ID: lnc-CHRNA4-4
Location (hg19): chr20:62005773-62009753
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 546 bp
Exons: 4
Sources: NONCODE v4
Alternative transcript names: NONHSAT080867
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -18.1936 non-coding 
CPAT coding probability 8.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHRNA4-4:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KCNQ2-4:1
4.0 lnc-CHRNA4-4:1
4.1 lnc-CHRNA4-4:1
5.0 lnc-CHRNA4-4:1
5.1 lnc-SPATA2-190:1
5.2 lnc-CHRNA4-4:1