Transcript: lnc-CHRNB4-1:3

Basic information

LNCipedia transcript ID: lnc-CHRNB4-1:3 
LNCipedia gene ID: lnc-CHRNB4-1
Location (hg19): chr15:78984920-79020096
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 578 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000558216.1; RP11-160C18.1-001; OTTHUMT00000418954.1; NONHSAT047591
Alternative gene names: ENSG00000259329.1; RP11-160C18.1; OTTHUMG00000172531.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 25.2771 non-coding 
CPAT coding probability 0.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHRNB4-1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ADAMTS7-1:2
4.0 lnc-CHRNB4-1:3
4.1 lnc-CHRNB4-1:3
5.0 lnc-CHRNB4-1:3
5.1 lnc-CHRNA3-8:2
5.2 lnc-CHRNB4-1:3