Transcript: lnc-CHRNB4-1:5

Basic information

LNCipedia transcript ID: lnc-CHRNB4-1:5 
LNCipedia gene ID: lnc-CHRNB4-1
Location (hg19): chr15:78979260-79000394
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 547 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000560868.1; RP11-160C18.1-002; OTTHUMT00000418953.1; NONHSAT047589
Alternative gene names: ENSG00000259329.1; RP11-160C18.1; OTTHUMG00000172531.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -102.5914 non-coding 
CPAT coding probability 7.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHRNB4-1:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ADAMTS7-1:4
4.0 lnc-CHRNB4-1:5
4.1 lnc-CHRNB4-1:5
5.0 lnc-CHRNB4-1:5
5.1 lnc-CHRNA3-8:4
5.2 lnc-CHRNB4-1:5