Transcript: lnc-CHST10-3:1

Basic information

LNCipedia transcript ID: lnc-CHST10-3:1 
LNCipedia gene ID: lnc-CHST10-3
Location (hg19): chr2:101168991-101174253
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2256 bp
Exons: 3
Sources: Nielsen et al.,2014
Alternative transcript names: l_1898_chr2:101168990-101174253_ovary
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.6529 non-coding 
CPAT coding probability 0.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHST10-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CHST10-3:1
4.0 lnc-CHST10-3:1
4.1 lnc-CHST10-3:1
5.0 lnc-CHST10-3:1
5.1 lnc-AFF3-11:1
5.2 lnc-CHST10-3:1