Transcript: lnc-CHST12-1:2

Basic information

LNCipedia transcript ID: lnc-CHST12-1:2 
LNCipedia gene ID: lnc-CHST12-1
Location (hg19): chr7:2477398-2487484
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2066 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00012865
Alternative gene names: XLOC_005968; linc-LFNG


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.2611 non-coding 
CPAT coding probability 1.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHST12-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CHST12-1:1
3.1 lnc-CHST12-1:2
4.0 lnc-CHST12-1:2
4.1 lnc-CHST12-1:2
5.0 lnc-CHST12-1:2
5.1 lnc-GPER1-57:2
5.2 lnc-CHST12-1:2