Transcript: lnc-CHST2-5:4

Basic information

LNCipedia transcript ID: lnc-CHST2-5:4 
LNCipedia gene ID: lnc-CHST2-5
Location (hg19): chr3:143753460-143755742
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 239 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00006254; NONHSAT092533
Alternative gene names: XLOC_002851; linc-ZIC1-6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 4.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHST2-5:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CHST2-3:1
3.1 lnc-CHST2-5:1
4.0 lnc-C3orf58-5:4
4.1 lnc-C3orf58-5:4
5.0 lnc-C3orf58-5:4
5.1 lnc-PXYLP1-35:3
5.2 lnc-CHST2-5:4