Transcript: lnc-CHST4-1:4

Basic information

LNCipedia transcript ID: lnc-CHST4-1:4 
LNCipedia gene ID: lnc-CHST4-1
Location (hg19): chr16:71549158-71551750
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 295 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00024453; NONHSAT143487
Alternative gene names: XLOC_011775; linc-CHST4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -139.7911 non-coding 
CPAT coding probability 1.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHST4-1:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CHST4-1:3
3.1 lnc-CHST4-1:4
4.0 lnc-CHST4-1:4
4.1 lnc-CHST4-1:4
5.0 lnc-CHST4-1:4
5.1 lnc-CHST4-1:4
5.2 lnc-CHST4-1:4