Transcript: lnc-CHST6-1:1

Basic information

LNCipedia transcript ID: lnc-CHST6-1:1 
LNCipedia gene ID: lnc-CHST6-1
Ensembl Gene ID: ENSG00000261476
Ensembl Transcript ID: ENST00000563554
Location (hg19): chr16:75492150-75493915
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 852 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000563554.1; RP11-77K12.3-001; OTTHUMT00000435197.1; NONHSAT143737
Alternative gene names: ENSG00000261476.1; RP11-77K12.3; OTTHUMG00000177068.1; AC009163.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -107.194 non-coding 
CPAT coding probability 6.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHST6-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CHST6-1:1
4.0 lnc-CHST6-1:1
4.1 lnc-CHST6-1:1
5.0 lnc-CHST6-1:1
5.1 lnc-MLKL-28:3
5.2 lnc-CHST6-1:1