Transcript: lnc-CHSY1-5:1

Basic information

LNCipedia transcript ID: lnc-CHSY1-5:1 
LNCipedia gene ID: lnc-CHSY1-5
Location (hg19): chr15:101433945-101459488
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2807 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000501269; ENST00000560351.1; RP11-66B24.4-001; OTTHUMT00000416700.1; NONHSAT051139
Alternative gene names: ENSG00000247392; ENSG00000259583.1; RP11-66B24.4; OTTHUMG00000172067.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.0185 non-coding 
CPAT coding probability 25.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CHSY1-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CHSY1-3:1
3.1 lnc-CHSY1-5:1
4.0 lnc-CHSY1-5:1
4.1 lnc-CHSY1-5:1
5.0 lnc-CHSY1-5:1
5.1 lnc-CIB1-110:2
5.2 lnc-CHSY1-5:1