Transcript: lnc-CKAP4-2:3

Basic information

LNCipedia transcript ID: lnc-CKAP4-2:3 
LNCipedia gene ID: lnc-CKAP4-2
Ensembl Gene ID: ENSG00000257545
Ensembl Transcript ID: ENST00000549203
RefSeq ID: NR_040246
Location (hg19): chr12:106890188-107168609
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 569 bp
Exons: 4
Sources: Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_040246; ENST00000549203.2; NR_040246.1
Alternative gene names: ENSG00000257545.4; RP11-144F15.1; AC079385.1; LOC100287944


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -57.0754 non-coding 
CPAT coding probability 7.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CKAP4-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CKAP4-2:1
4.0 lnc-RP11-144F15.1.1-2:2
4.1 lnc-RP11-144F15.1.1-2:2
5.0 lnc-RP11-144F15.1.1-2:2
5.1 lnc-APPL2-18:2
5.2 lnc-CKAP4-2:3