Transcript: lnc-CLDN10-9:3

Basic information

LNCipedia transcript ID: lnc-CLDN10-9:3 
LNCipedia gene ID: lnc-CLDN10-9
Location (hg19): chr13:95926217-95931716
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 717 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000015791.1|FTMT25100000402.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -131.0426 non-coding 
CPAT coding probability 1.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CLDN10-9:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-CLDN10-9:3
5.0 lnc-CLDN10-9:3
5.1 lnc-COL4A2-138:1
5.2 lnc-CLDN10-9:3