Transcript: lnc-CLDN16-9:1

Basic information

LNCipedia transcript ID: lnc-CLDN16-9:1 
LNCipedia gene ID: lnc-CLDN16-9
Location (hg19): chr3:190142439-190142873
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 435 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000063311.1|HBMT00000991739.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -14.5466 non-coding 
CPAT coding probability 0.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CLDN16-9:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-CLDN16-9:1
5.0 lnc-CLDN16-9:1
5.1 lnc-MUC20-63:1
5.2 lnc-CLDN16-9:1