Transcript: lnc-CLDN20-2:1

Basic information

LNCipedia transcript ID: lnc-CLDN20-2:1 
LNCipedia gene ID: lnc-CLDN20-2
Location (hg19): chr6:156193878-156203534
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 487 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00011998; NONHSAT115679
Alternative gene names: XLOC_005512; linc-ARID1B-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -99.8739 non-coding 
CPAT coding probability 0.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CLDN20-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CLDN20-2:1
3.1 lnc-CLDN20-2:1
4.0 lnc-CLDN20-2:1
4.1 lnc-CLDN20-2:1
5.0 lnc-CLDN20-2:1
5.1 lnc-GTF2H5-21:1
5.2 lnc-CLDN20-2:1