Transcript: lnc-CLIC3-4:1

Basic information

LNCipedia transcript ID: lnc-CLIC3-4:1 
LNCipedia gene ID: lnc-CLIC3-4
Location (hg19): chr9:139869546-139871433
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 686 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000413913.1; RP11-229P13.19-001; OTTHUMT00000055219.1; NONHSAT135635
Alternative gene names: ENSG00000238268.1; RP11-229P13.19; OTTHUMG00000020963.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -55.1921 non-coding 
CPAT coding probability 26.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CLIC3-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CLIC3-1:1
4.0 lnc-CLIC3-4:1
4.1 lnc-CLIC3-4:1
5.0 lnc-CLIC3-4:1
5.1 lnc-RNF208-22:1
5.2 lnc-CLIC3-4:1