Transcript: lnc-CLIC6-3:1

Basic information

LNCipedia transcript ID: lnc-CLIC6-3:1 
LNCipedia gene ID: lnc-CLIC6-3
Ensembl Gene ID: ENSG00000234703
Ensembl Transcript ID: ENST00000455028
Location (hg19): chr21:36508935-36511519
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 698 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000455028; ENST00000455028.1; AF015262.2-001; OTTHUMT00000194246.1; NONHSAT081906
Alternative gene names: ENSG00000234703; AF015262.2; ENSG00000234703.1; OTTHUMG00000086303.1; AF015262.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -63.8965 non-coding 
CPAT coding probability 0.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CLIC6-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CLIC6-3:1
3.1 lnc-CLIC6-3:1
4.0 lnc-CLIC6-3:1
4.1 lnc-CLIC6-3:1
5.0 lnc-CLIC6-3:1
5.1 lnc-SON-21:1
5.2 lnc-CLIC6-3:1