Transcript: lnc-CLINT1-2:1

Basic information

LNCipedia transcript ID: lnc-CLINT1-2:1 
LNCipedia gene ID: lnc-CLINT1-2
Ensembl Gene ID: ENSG00000253449
Ensembl Transcript ID: ENST00000523178
Location (hg19): chr5:157652360-157661384
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 771 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Hangauer et al., 2013; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000523178; ENST00000523178.1; CTC-436K13.6-001; OTTHUMT00000374015.1; NONHSAT104790; FPKM1_group_26610_transcript_1
Alternative gene names: ENSG00000253449; CTC-436K13.6; ENSG00000253449.1; OTTHUMG00000163530.1; AC025437.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -29.5647 non-coding 
CPAT coding probability 4.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CLINT1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CLINT1-2:1
3.1 lnc-CLINT1-2:1
4.0 lnc-CLINT1-2:1
4.1 lnc-CLINT1-2:1
5.0 lnc-CLINT1-2:1
5.1 lnc-FAM71B-16:1
5.2 lnc-CLINT1-2:1