Transcript: lnc-CLN6-27:1

Basic information

LNCipedia transcript ID: lnc-CLN6-27:1 
LNCipedia gene ID: lnc-CLN6-27
Location (hg19): chr15:68591128-68593343
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2216 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000569808.1; RP11-709B3.2-001; OTTHUMT00000421918.1; NONHSAT046887
Alternative gene names: ENSG00000261425.1; RP11-709B3.2; OTTHUMG00000173044.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -29.9475 non-coding 
CPAT coding probability 3.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CLN6-27:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ITGA11-1:1
4.0 lnc-ITGA11-1:1
4.1 lnc-ITGA11-1:1
5.0 lnc-ITGA11-1:1
5.1 lnc-CLN6-4:1
5.2 lnc-CLN6-27:1