Transcript: lnc-CLRN1-2:1

Basic information

LNCipedia transcript ID: lnc-CLRN1-2:1 
LNCipedia gene ID: lnc-CLRN1-2
Location (hg19): chr3:150618941-150621181
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 449 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: TCONS_00005848; ENST00000474598; ENST00000474598.1; RP11-373I8.1-001; OTTHUMT00000357700.1; NONHSAT092715
Alternative gene names: XLOC_003285; linc-SIAH2; ENSG00000244382; RP11-373I8.1; ENSG00000244382.1; OTTHUMG00000159848.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -335.4862 non-coding 
CPAT coding probability 3.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CLRN1-2:1 no no no no

Available literature

  1. Yang (2015), Genome-wide analysis of long noncoding RNA profile in human gastric epithelial cell response to Helicobacter pylori., Jpn. J. Infect. Dis.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM188B2-1:1
3.1 lnc-FAM188B2-1:1
4.0 lnc-FAM188B2-2:1
4.1 lnc-FAM188B2-2:1
5.0 lnc-FAM188B2-2:1
5.1 lnc-SIAH2-5:1
5.2 lnc-CLRN1-2:1