Transcript: lnc-CLRN2-1:1

Basic information

LNCipedia transcript ID: lnc-CLRN2-1:1 
LNCipedia gene ID: lnc-CLRN2-1
Location (hg19): chr4:17484658-17487209
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1936 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; NONCODE v4
Alternative transcript names: ENST00000515087; TCONS_00007487; NONHSAT095705
Alternative gene names: ENSG00000251507; XLOC_003471; linc-CLRN2-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 19.7456 non-coding 
CPAT coding probability 6.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CLRN2-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CLRN2-1:1
3.1 lnc-CLRN2-1:1
4.0 lnc-CLRN2-1:1
4.1 lnc-CLRN2-1:1
5.0 lnc-CLRN2-1:1
5.1 lnc-USP17L28-64:1
5.2 lnc-CLRN2-1:1