Transcript: lnc-CLVS2-3:1

Basic information

LNCipedia transcript ID: lnc-CLVS2-3:1 
LNCipedia gene ID: lnc-CLVS2-3
Ensembl Gene ID: ENSG00000237321
Ensembl Transcript ID: ENST00000441521
Location (hg19): chr6:124144385-124150430
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 649 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000441521.1; RP11-374A22.1-001; OTTHUMT00000042054.1; NONHSAT114776
Alternative gene names: ENSG00000237321.1; RP11-374A22.1; OTTHUMG00000015498.1; AL354936.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -169.7082 non-coding 
CPAT coding probability 0.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CLVS2-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CLVS2-3:1
4.0 lnc-CLVS2-3:1
4.1 lnc-CLVS2-3:1
5.0 lnc-CLVS2-3:1
5.1 lnc-TPD52L1-11:1
5.2 lnc-CLVS2-3:1