Transcript: lnc-CMPK2-5:2

Basic information

LNCipedia transcript ID: lnc-CMPK2-5:2 
HGNC Gene Symbol: lnc-CMPK2-5    
HGNC Full Gene Name: MIR7515 host gene
Ensembl Gene ID: ENSG00000236172
Ensembl Transcript ID: ENST00000456028
Location (hg19): chr2:6766244-6774838
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 540 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003177; ENST00000456028; ENST00000456028.1; AC097517.1-002; OTTHUMT00000323352.1; NONHSAT068863; ENST00000456028.5
Alternative gene names: XLOC_001963; linc-RNASEH1-9; ENSG00000234815; AC097517.1; ENSG00000234815.1; OTTHUMG00000151632.1; ENSG00000236172.2; hsa-mir-7515; ENSG00000236172.6; MIR7515HG


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -744.0895 non-coding 
CPAT coding probability 4.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CMPK2-5:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CMPK2-5:2
3.1 lnc-CMPK2-5:2
4.0 lnc-CMPK2-5:2
4.1 lnc-CMPK2-5:2
5.0 lnc-CMPK2-5:2
5.1 lnc-RAD51AP2-155:71
5.2 lnc-CMPK2-5:2