Transcript: lnc-CMPK2-6:1

Basic information

LNCipedia transcript ID: lnc-CMPK2-6:1 
LNCipedia gene ID: lnc-CMPK2-6
Ensembl Gene ID: ENSG00000223884
Ensembl Transcript ID: ENST00000415520
RefSeq ID: NR_110252
Location (hg19): chr2:7202858-7218011
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 530 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000415520.1; AC019048.1-001; OTTHUMT00000323410.1; NONHSAT068939; NR_110252; ENST00000415520.5; NR_110252.1
Alternative gene names: ENSG00000223884.1; AC019048.1; OTTHUMG00000151660.1; ENSG00000223884.5; AC068481.1; LOC101929452


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -55.1814 non-coding 
CPAT coding probability 2.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CMPK2-6:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CMPK2-6:1
4.0 lnc-CMPK2-6:1
4.1 lnc-CMPK2-6:1
5.0 lnc-CMPK2-6:1
5.1 lnc-RAD51AP2-152:2
5.2 lnc-CMPK2-6:1