Transcript: lnc-CMTM3-1:1

Basic information

LNCipedia transcript ID: lnc-CMTM3-1:1 
LNCipedia gene ID: lnc-CMTM3-1
Ensembl Gene ID: ENSG00000260465
Ensembl Transcript ID: ENST00000569274
Location (hg19): chr16:66754800-66765688
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1790 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000501688; ENST00000569274.1; RP11-63M22.2-001; OTTHUMT00000423238.1; NONHSAT143036
Alternative gene names: ENSG00000246901; ENSG00000260465.1; RP11-63M22.2; OTTHUMG00000173475.1; AC018557.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -162.0134 non-coding 
CPAT coding probability 0.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CMTM3-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CMTM3-1:1
3.1 lnc-CMTM3-1:1
4.0 lnc-CMTM3-1:1
4.1 lnc-CMTM3-1:1
5.0 lnc-CMTM3-1:1
5.1 lnc-NOL3-34:1
5.2 lnc-CMTM3-1:1