Transcript: lnc-CNBD1-4:4

Basic information

LNCipedia transcript ID: lnc-CNBD1-4:4 
LNCipedia gene ID: lnc-CNBD1-4
Ensembl Gene ID: ENSG00000253553
Ensembl Transcript ID: ENST00000520312
Location (hg19): chr8:89554833-89721956
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 554 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000520312.1; RP11-586K2.1-004; OTTHUMT00000375325.1; NONHSAT127595
Alternative gene names: ENSG00000253553.1; RP11-586K2.1; OTTHUMG00000163770.2; ENSG00000253553.5; AC090568.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 16.7626 non-coding 
CPAT coding probability 1.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CNBD1-4:4 no no no no

Available literature

  1. Li (2015), Distinct expression profiles of lncRNAs between regressive and mature scars., Cell. Physiol. Biochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CNBD1-4:4
4.0 lnc-CNBD1-4:4
4.1 lnc-CNBD1-4:4
5.0 lnc-CNBD1-4:4
5.1 lnc-CA2-29:11
5.2 lnc-CNBD1-4:4