Transcript: lnc-CNBD1-4:6

Basic information

LNCipedia transcript ID: lnc-CNBD1-4:6 
LNCipedia gene ID: lnc-CNBD1-4
Ensembl Gene ID: ENSG00000253553
Ensembl Transcript ID: ENST00000521936
Location (hg19): chr8:89712520-89749363
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1469 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000521936.1; RP11-586K2.1-006; OTTHUMT00000375327.1; NONHSAT127602
Alternative gene names: ENSG00000253553.1; RP11-586K2.1; OTTHUMG00000163770.2; ENSG00000253553.5; AC090568.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.5843 non-coding 
CPAT coding probability 1.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CNBD1-4:6 no no no no

Available literature

  1. Li (2015), Distinct expression profiles of lncRNAs between regressive and mature scars., Cell. Physiol. Biochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CNBD1-4:6
4.0 lnc-CNBD1-4:6
4.1 lnc-CNBD1-4:6
5.0 lnc-CNBD1-4:6
5.1 lnc-CA2-29:17
5.2 lnc-CNBD1-4:6