Transcript: lnc-CNNM1-1:1

Basic information

LNCipedia transcript ID: lnc-CNNM1-1:1 
LNCipedia gene ID: lnc-CNNM1-1
Location (hg19): chr10:101190948-101195542
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 666 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000416191.1; RP11-441O15.3-001; OTTHUMT00000049797.1; NONHSAT015916
Alternative gene names: ENSG00000224934.1; RP11-441O15.3; OTTHUMG00000018883.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -131.1437 non-coding 
CPAT coding probability 1.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CNNM1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CNNM1-1:1
4.0 lnc-CNNM1-1:1
4.1 lnc-CNNM1-1:1
5.0 lnc-CNNM1-1:1
5.1 lnc-SMC3-165:8
5.2 lnc-CNNM1-1:1