Transcript: lnc-CNNM1-1:12

Basic information

LNCipedia transcript ID: lnc-CNNM1-1:12 
LNCipedia gene ID: lnc-CNNM1-1
Location (hg19): chr10:101223283-101225587
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 289 bp
Exons: 2
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT015917; FPKM1_group_3801_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -168.2409 non-coding 
CPAT coding probability 0.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CNNM1-1:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NKX2-3-3:1
4.0 lnc-NKX2-3-3:1
4.1 lnc-CNNM1-1:12
5.0 lnc-CNNM1-1:12
5.1 lnc-SMC3-165:13
5.2 lnc-CNNM1-1:12