Transcript: lnc-CNTNAP3-24:4

Basic information

LNCipedia transcript ID: lnc-CNTNAP3-24:4 
LNCipedia gene ID: lnc-CNTNAP3-24
Location (hg19): chr9:41958802-42019584
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4707 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT131276; NR_003670
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 112.9483 coding 
CPAT coding probability 40.08% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CNTNAP3-24:4 no no no no

Available literature

  1. Shen (2014), Long non-coding RNA profiling in laryngeal squamous cell carcinoma and its clinical significance: potential biomarkers for LSCC., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM75A4-3:3
4.0 lnc-FAM75A4-3:3
4.1 lnc-FAM75A4-3:3
5.0 lnc-FAM75A4-3:3
5.1 lnc-SHB-24:4
5.2 lnc-CNTNAP3-24:4