Transcript: lnc-CNTNAP3-24:6

Basic information

LNCipedia transcript ID: lnc-CNTNAP3-24:6 
LNCipedia gene ID: lnc-CNTNAP3-24
Location (hg19): chr9:41961617-42019580
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1888 bp
Exons: 3
Sources: Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000639056.1
Alternative gene names: ENSG00000283886.1; BX664615.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 112.9483 coding 
CPAT coding probability 30.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CNTNAP3-24:6 no no no no

Available literature

  1. Shen (2014), Long non-coding RNA profiling in laryngeal squamous cell carcinoma and its clinical significance: potential biomarkers for LSCC., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-SHB-24:6
5.1 lnc-SHB-24:6
5.2 lnc-CNTNAP3-24:6