Transcript: lnc-COA4-1:2

Basic information

LNCipedia transcript ID: lnc-COA4-1:2 
LNCipedia gene ID: lnc-COA4-1
Location (hg19): chr11:73594907-73597748
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2176 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000421949; ENST00000421949.3; RP11-707G14.6-001; OTTHUMT00000397898.1; NONHSAT022861
Alternative gene names: ENSG00000247629; RP11-707G14.6; ENSG00000247629.2; OTTHUMG00000168063.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 14.3133 non-coding 
CPAT coding probability 0.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COA4-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CHCHD8-1:2
3.1 lnc-CHCHD8-1:2
4.0 lnc-CHCHD8-1:2
4.1 lnc-CHCHD8-1:2
5.0 lnc-CHCHD8-1:2
5.1 lnc-UCP3-10:2
5.2 lnc-COA4-1:2