Transcript: lnc-COG2-1:1

Basic information

LNCipedia transcript ID: lnc-COG2-1:1 
LNCipedia gene ID: lnc-COG2-1
Location (hg19): chr1:230728406-230731329
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 403 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00000415; ENST00000412647; ENST00000412647.1; RP11-543E8.1-001; OTTHUMT00000092105.1; NONHSAT010124
Alternative gene names: XLOC_000606; linc-COG2-1; ENSG00000232964; RP11-543E8.1; ENSG00000232964.1; OTTHUMG00000037760.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -17.6222 non-coding 
CPAT coding probability 2.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COG2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-COG2-1:1
3.1 lnc-COG2-1:1
4.0 lnc-COG2-1:1
4.1 lnc-COG2-1:1
5.0 lnc-COG2-1:1
5.1 lnc-ZNF678-74:1
5.2 lnc-COG2-1:1