Transcript: lnc-COL20A1-1:2

Basic information

LNCipedia transcript ID: lnc-COL20A1-1:2 
LNCipedia gene ID: lnc-COL20A1-1
Ensembl Gene ID: ENSG00000203900
Ensembl Transcript ID: ENST00000428531
Location (hg19): chr20:62000234-62002524
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 513 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000428531; ENST00000428531.1; RP11-261N11.8-001; OTTHUMT00000080116.1; NONHSAT080865
Alternative gene names: ENSG00000203900; RP11-261N11.8; ENSG00000203900.2; OTTHUMG00000032958.2; AL121827.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -90.7628 non-coding 
CPAT coding probability 13.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COL20A1-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-COL20A1-1:2
3.1 lnc-COL20A1-1:2
4.0 lnc-COL20A1-1:2
4.1 lnc-COL20A1-1:2
5.0 lnc-COL20A1-1:2
5.1 lnc-GNAS-65:3
5.2 lnc-COL20A1-1:2