Transcript: lnc-COL20A1-3:4

Basic information

LNCipedia transcript ID: lnc-COL20A1-3:4 
LNCipedia gene ID: lnc-COL20A1-3
Location (hg19): chr20:62033153-62034595
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1268 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00028268; NONHSAT080879
Alternative gene names: XLOC_013612; linc-PPDPF-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.1148 non-coding 
CPAT coding probability 28.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COL20A1-3:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-COL20A1-3:4
3.1 lnc-COL20A1-3:4
4.0 lnc-COL20A1-3:4
4.1 lnc-COL20A1-3:4
5.0 lnc-COL20A1-3:4
5.1 lnc-GNAS-67:5
5.2 lnc-COL20A1-3:4