Transcript: lnc-COL28A1-1:9

Basic information

LNCipedia transcript ID: lnc-COL28A1-1:9 
LNCipedia gene ID: lnc-COL28A1-1
RefSeq ID: NR_110084
Location (hg19): chr7:7589735-7605696
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 2411 bp
Exons: 5
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110084; NR_110084.1
Alternative gene names: LOC101927391


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 35.3336 non-coding 
CPAT coding probability 0.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COL28A1-1:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-COL28A1-1:9
4.0 lnc-COL28A1-1:9
4.1 lnc-COL28A1-1:9
5.0 lnc-COL28A1-1:9
5.1 lnc-RNF216-33:14
5.2 lnc-COL28A1-1:9