Transcript: lnc-COL4A1-2:8

Basic information

LNCipedia transcript ID: lnc-COL4A1-2:8 
LNCipedia gene ID: lnc-COL4A1-2
Location (hg19): chr13:110687619-110697650
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1807 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00022109
Alternative gene names: XLOC_010719; linc-IRS2-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -39.8675 non-coding 
CPAT coding probability 1.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COL4A1-2:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-COL4A1-2:8
3.1 lnc-COL4A1-2:8
4.0 lnc-COL4A1-2:8
4.1 lnc-COL4A1-2:8
5.0 lnc-COL4A1-2:8
5.1 lnc-COL4A1-2:8
5.2 lnc-COL4A1-2:8